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Empirical Bayes non-negative matrix factorization for single-cell RNA-seq data2 years ago
Preparing the single-cell data for flashier | Variance regularization | Fit a flashier model | Visualizing the cell matrix | Visualizing the gene matrix | Other notes | Session info
flashier 1.0.60Jason Willwerscheid flashier_single_cell.Rmd
Advanced flashier2 years ago
Pipeable interface | Customizing the order of operations | An alternative backfitting method | Troubleshooting: turning off extrapolation | Adding an intercept | Fixed sparsity patterns | Modifying the convergence criterion and verbose output | Writing custom convergence criteria and verbose output functions using flash_fit objects | Writing custom EBNM functions | A recipe for plotting fitting progress | Session information
flashier 1.0.60Jason Willwerscheid advanced_flashier.Rmd
A closer look at flashier2 years ago
The EBMF Model | The gtex dataset and the flash() function | Variance structures | Measurement error | Prior families | Backfitting | Sampling from the posterior | Session information
flashier 1.0.60Jason Willwerscheid flashier_closer_look.Rmd
Introduction to flashier2 years ago
Session information | Bibliography
flashier 1.0.60Jason Willwerscheid flashier_intro.Rmd